Index

_

_compute_psf_at_defocus() (psf_generator.propagators.scalar_spherical_propagator.ScalarSphericalPropagator method) (psf_generator.propagators.ScalarSphericalPropagator method) (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator method) (psf_generator.propagators.VectorialSphericalPropagator method) (psf_generator.ScalarSphericalPropagator method) (psf_generator.VectorialSphericalPropagator method) _compute_psf_intensity() (in module psf_generator.utils.plots) _compute_zernike_aberrations() (psf_generator.propagators.cartesian_propagator.CartesianPropagator method) (psf_generator.propagators.spherical_propagator.SphericalPropagator method) _FIG_SIZE (in module psf_generator.utils.plots) _get_args() (psf_generator.propagators.propagator.Propagator method) (psf_generator.propagators.vectorial_cartesian_propagator.VectorialCartesianPropagator method) (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator method) (psf_generator.propagators.VectorialCartesianPropagator method) (psf_generator.propagators.VectorialSphericalPropagator method) (psf_generator.VectorialCartesianPropagator method) (psf_generator.VectorialSphericalPropagator method)

_LABEL_SIZE (in module psf_generator.utils.plots) _SUP_TITLE_SIZE (in module psf_generator.utils.plots) _TICK_SIZE (in module psf_generator.utils.plots) _TITLE_SIZE (in module psf_generator.utils.plots) _zernike_aberrations (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute)

A

apod_factor (psf_generator.propagators.propagator.Propagator attribute)

apply_disk_mask() (in module psf_generator.utils.plots)

B

BesselJ0 (class in psf_generator.utils.bessel)

BesselJ1 (class in psf_generator.utils.bessel)

C

CartesianPropagator (class in psf_generator.propagators.cartesian_propagator) colorbar() (in module psf_generator.utils.plots) compute_focus_field() (psf_generator.propagators.cartesian_propagator.CartesianPropagator method) (psf_generator.propagators.propagator.Propagator method) (psf_generator.propagators.scalar_spherical_propagator.ScalarSphericalPropagator method) (psf_generator.propagators.ScalarSphericalPropagator method) (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator method) (psf_generator.propagators.VectorialSphericalPropagator method) (psf_generator.ScalarSphericalPropagator method) (psf_generator.VectorialSphericalPropagator method) compute_optical_path() (psf_generator.propagators.propagator.Propagator method) convert_tensor_to_array() (in module psf_generator.utils.misc) correction_factor (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute)

cos_factor (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute) cos_phi (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator attribute) (psf_generator.propagators.VectorialSphericalPropagator attribute) (psf_generator.VectorialSphericalPropagator attribute) cos_twophi (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator attribute) (psf_generator.propagators.VectorialSphericalPropagator attribute) (psf_generator.VectorialSphericalPropagator attribute) create_pupil_mesh() (in module psf_generator.utils.zernike) create_special_pupil() (in module psf_generator.utils.zernike) create_zernike_aberrations() (in module psf_generator.utils.zernike) custom_fft2() (in module psf_generator.utils.czt) custom_ifft2() (in module psf_generator.utils.czt)

D

defocus_filters (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute) defocus_max (psf_generator.propagators.propagator.Propagator attribute) defocus_min (psf_generator.propagators.propagator.Propagator attribute) defocus_range (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute)

defocus_step (psf_generator.propagators.propagator.Propagator attribute) device (psf_generator.propagators.propagator.Propagator attribute) ds (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) dtheta (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute)

E

e0x (psf_generator.propagators.vectorial_cartesian_propagator.VectorialCartesianPropagator attribute) (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator attribute) (psf_generator.propagators.VectorialCartesianPropagator attribute) (psf_generator.propagators.VectorialSphericalPropagator attribute) (psf_generator.VectorialCartesianPropagator attribute) (psf_generator.VectorialSphericalPropagator attribute)

e0y (psf_generator.propagators.vectorial_cartesian_propagator.VectorialCartesianPropagator attribute) (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator attribute) (psf_generator.propagators.VectorialCartesianPropagator attribute) (psf_generator.propagators.VectorialSphericalPropagator attribute) (psf_generator.VectorialCartesianPropagator attribute) (psf_generator.VectorialSphericalPropagator attribute) envelope (psf_generator.propagators.propagator.Propagator attribute)

F

forward() (psf_generator.utils.bessel.BesselJ0 static method) (psf_generator.utils.bessel.BesselJ1 static method)

fov (psf_generator.propagators.propagator.Propagator attribute)

G

get_correction_factor() (psf_generator.propagators.cartesian_propagator.CartesianPropagator method) (psf_generator.propagators.spherical_propagator.SphericalPropagator method) get_name() (psf_generator.propagators.propagator.Propagator class method) (psf_generator.propagators.scalar_cartesian_propagator.ScalarCartesianPropagator class method) (psf_generator.propagators.scalar_spherical_propagator.ScalarSphericalPropagator class method) (psf_generator.propagators.ScalarCartesianPropagator class method) (psf_generator.propagators.ScalarSphericalPropagator class method) (psf_generator.propagators.vectorial_cartesian_propagator.VectorialCartesianPropagator class method) (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator class method) (psf_generator.propagators.VectorialCartesianPropagator class method) (psf_generator.propagators.VectorialSphericalPropagator class method) (psf_generator.ScalarCartesianPropagator class method) (psf_generator.ScalarSphericalPropagator class method) (psf_generator.VectorialCartesianPropagator class method) (psf_generator.VectorialSphericalPropagator class method)

get_pupil() (psf_generator.propagators.cartesian_propagator.CartesianPropagator method) (psf_generator.propagators.propagator.Propagator method) (psf_generator.propagators.spherical_propagator.SphericalPropagator method) gibson_lanni (psf_generator.propagators.propagator.Propagator attribute)

I

index_to_nl() (in module psf_generator.utils.zernike) initialize_input_field() (psf_generator.propagators.propagator.Propagator method) (psf_generator.propagators.scalar_cartesian_propagator.ScalarCartesianPropagator method) (psf_generator.propagators.scalar_spherical_propagator.ScalarSphericalPropagator method) (psf_generator.propagators.ScalarCartesianPropagator method) (psf_generator.propagators.ScalarSphericalPropagator method) (psf_generator.propagators.vectorial_cartesian_propagator.VectorialCartesianPropagator method) (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator method) (psf_generator.propagators.VectorialCartesianPropagator method) (psf_generator.propagators.VectorialSphericalPropagator method) (psf_generator.ScalarCartesianPropagator method) (psf_generator.ScalarSphericalPropagator method) (psf_generator.VectorialCartesianPropagator method) (psf_generator.VectorialSphericalPropagator method)

integrator (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute)

J

jvp() (psf_generator.utils.bessel.BesselJ0 static method) (psf_generator.utils.bessel.BesselJ1 static method)

K

k (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute)

k_end (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) k_start (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute)

L

load_from_npy() (in module psf_generator.utils.handle_data) load_image() (in module psf_generator.utils.handle_data)

load_stats_from_csv() (in module psf_generator.utils.handle_data) lw (in module psf_generator.utils.plots)

M

markersize (in module psf_generator.utils.plots) module psf_generator psf_generator.propagators psf_generator.propagators.cartesian_propagator psf_generator.propagators.propagator psf_generator.propagators.scalar_cartesian_propagator psf_generator.propagators.scalar_spherical_propagator psf_generator.propagators.spherical_propagator psf_generator.propagators.vectorial_cartesian_propagator psf_generator.propagators.vectorial_spherical_propagator psf_generator.utils psf_generator.utils.bessel psf_generator.utils.czt psf_generator.utils.handle_data psf_generator.utils.integrate psf_generator.utils.misc psf_generator.utils.plots psf_generator.utils.zernike

N

n_defocus (psf_generator.propagators.propagator.Propagator attribute) n_g (psf_generator.propagators.propagator.Propagator attribute) n_g0 (psf_generator.propagators.propagator.Propagator attribute) n_i (psf_generator.propagators.propagator.Propagator attribute) n_i0 (psf_generator.propagators.propagator.Propagator attribute)

n_pix_psf (psf_generator.propagators.propagator.Propagator attribute) n_pix_pupil (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) (psf_generator.propagators.propagator.Propagator attribute) n_s (psf_generator.propagators.propagator.Propagator attribute) na (psf_generator.propagators.propagator.Propagator attribute) num_thetas (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute)

P

pix_size (psf_generator.propagators.propagator.Propagator attribute) plot_psf() (in module psf_generator.utils.plots) plot_pupil() (in module psf_generator.utils.plots) Propagator (class in psf_generator.propagators.propagator) psf_generator module psf_generator.propagators module psf_generator.propagators.cartesian_propagator module psf_generator.propagators.propagator module psf_generator.propagators.scalar_cartesian_propagator module psf_generator.propagators.scalar_spherical_propagator module psf_generator.propagators.spherical_propagator module psf_generator.propagators.vectorial_cartesian_propagator module

psf_generator.propagators.vectorial_spherical_propagator module psf_generator.utils module psf_generator.utils.bessel module psf_generator.utils.czt module psf_generator.utils.handle_data module psf_generator.utils.integrate module psf_generator.utils.misc module psf_generator.utils.plots module psf_generator.utils.zernike module

R

riemann_rule() (in module psf_generator.utils.integrate) rr (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute)

rr_indices (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute) rs (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute)

S

s_max (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute) s_x (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) s_zz (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) save_as_npy() (in module psf_generator.utils.handle_data) save_image() (in module psf_generator.utils.handle_data) save_parameters() (psf_generator.propagators.propagator.Propagator method) save_stats_as_csv() (in module psf_generator.utils.handle_data) ScalarCartesianPropagator (class in psf_generator) (class in psf_generator.propagators) (class in psf_generator.propagators.scalar_cartesian_propagator) ScalarSphericalPropagator (class in psf_generator) (class in psf_generator.propagators) (class in psf_generator.propagators.scalar_spherical_propagator)

simpsons_rule() (in module psf_generator.utils.integrate) sin_phi (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator attribute) (psf_generator.propagators.VectorialSphericalPropagator attribute) (psf_generator.VectorialSphericalPropagator attribute) sin_twophi (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator attribute) (psf_generator.propagators.VectorialSphericalPropagator attribute) (psf_generator.VectorialSphericalPropagator attribute) special_phase_mask (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) SphericalPropagator (class in psf_generator.propagators.spherical_propagator) sz_correction (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute)

T

t_g (psf_generator.propagators.propagator.Propagator attribute) t_g0 (psf_generator.propagators.propagator.Propagator attribute) t_i (psf_generator.propagators.propagator.Propagator attribute)

t_i0 (psf_generator.propagators.propagator.Propagator attribute) theta_max (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute) thetas (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute) total_fft_range (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute)

U

update_custom_field() (psf_generator.propagators.cartesian_propagator.CartesianPropagator method) (psf_generator.propagators.spherical_propagator.SphericalPropagator method)

update_zernike_coefficients() (psf_generator.propagators.propagator.Propagator method)

V

varphi (psf_generator.propagators.vectorial_spherical_propagator.VectorialSphericalPropagator attribute) (psf_generator.propagators.VectorialSphericalPropagator attribute) (psf_generator.VectorialSphericalPropagator attribute) VectorialCartesianPropagator (class in psf_generator) (class in psf_generator.propagators) (class in psf_generator.propagators.vectorial_cartesian_propagator)

VectorialSphericalPropagator (class in psf_generator) (class in psf_generator.propagators) (class in psf_generator.propagators.vectorial_spherical_propagator) vjp() (psf_generator.utils.bessel.BesselJ0 static method) (psf_generator.utils.bessel.BesselJ1 static method)

W

wavelength (psf_generator.propagators.propagator.Propagator attribute)

X

x (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute) (psf_generator.propagators.spherical_propagator.SphericalPropagator attribute)

Z

z_p (psf_generator.propagators.propagator.Propagator attribute) zernike_coefficients (psf_generator.propagators.propagator.Propagator attribute)

zernike_nl() (in module psf_generator.utils.zernike) zoom_factor (psf_generator.propagators.cartesian_propagator.CartesianPropagator attribute)